Epitope Mapping with Sidewinder - XL-MS and Structural Modeling

Unit / Facility

Clinical Proteomics and Immunology / Malmström Lab (Lund)

System / Target

Epitope mapping combining cross-linking mass spectrometry (XL-MS) with structural modeling; Sidewinder approach for identification and structural interpretation of protein epitopes.

Organism / Source

Streptococcal antigens / human IgG

Approx. Data Collection Years

~2023–2025

Access / Reuse Status

Public

Main Public Repository / Storage

PRIDE / ProteomeXchange; publication supplementary data

Techniques Used

MS / Proteomics Integrative / computational modelling (non-MD)

Repository Links

Publication: Int J Mol Sci (2025)
SciLifeLab Publication: SciLifeLab Publication
Proteomics: XL-MS dataset (PRIDE/PXD - ID to be confirmed from publication)

Publications

Epitope Mapping with Sidewinder: An XL-MS and Structural Modeling Approach Int J Mol Sci (2025) DOI: 10.3390/ijms26041488 PubMed: 40003954

Epitope mapping workflow combining XL-MS with structural modeling. From the publication list.

Machine-Readable Metadata

⬇ Download dataset metadata (JSON) | View raw JSON